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| U | Metalurg Skopje | - | Qarabağ FK | 0:1 (0:0) | ||
| R | Qarabağ FK | - | Metalurg Skopje | 1:0 (0:0) | ||
| U: 02.07.2013 17:45 | R: 11.07.2013 18:00 | Winnaars: Qarabağ FK | ||||
| U | Sliema Wanderers | - | Khazar Lankaran | 1:1 (0:1) | ||
| R | Khazar Lankaran | - | Sliema Wanderers | 1:0 (1:0) | ||
| U: 02.07.2013 17:45 | R: 11.07.2013 17:00 | Winnaars: Khazar Lankaran | ||||
| U | JK Narva Trans | - | Gefle IF | 0:3 (0:1) | ||
| R | Gefle IF | - | JK Narva Trans | 5:1 (1:0) | ||
| U: 02.07.2013 18:00 | R: 11.07.2013 17:00 | Winnaars: Gefle IF | ||||
| U | Bala Town | - | FC Levadia | 1:0 (1:0) | ||
| R | FC Levadia | - | Bala Town | 3:1 (2:0) | ||
| U: 02.07.2013 20:00 | R: 11.07.2013 18:00 | Winnaars: FC Levadia | ||||
| U | ÍF Fuglafjørður | - | Linfield FC | 0:2 (0:0) | ||
| R | Linfield FC | - | ÍF Fuglafjørður | 3:0 (1:0) | ||
| U: 03.07.2013 20:45 | R: 10.07.2013 20:45 | Winnaars: Linfield FC | ||||
| U | Chikhura Sachkhere | - | FC Vaduz | 0:0 (0:0) | ||
| R | FC Vaduz | - | Chikhura Sachkhere | 1:1 (1:1) | ||
| U: 04.07.2013 16:00 | R: 11.07.2013 19:00 | Winnaars: Chikhura Sachkhere | ||||
| U | FK Astana | - | Botev Plovdiv | 0:1 (0:1) | ||
| R | Botev Plovdiv | - | FK Astana | 5:0 (0:0) | ||
| U: 04.07.2013 16:00 | R: 11.07.2013 19:30 | Winnaars: Botev Plovdiv | ||||
| U | FC Milsami | - | F91 Dudelange | 1:0 (1:0) | ||
| R | F91 Dudelange | - | FC Milsami | 0:0 (0:0) | ||
| U: 04.07.2013 17:00 | R: 11.07.2013 18:00 | Winnaars: FC Milsami | ||||
| U | Gandzasar Kapan | - | FK Aktobe | 1:2 (0:0) | ||
| R | FK Aktobe | - | Gandzasar Kapan | 2:1 (1:1) | ||
| U: 04.07.2013 17:00 | R: 11.07.2013 18:00 | Winnaars: FK Aktobe | ||||
| U | UE Santa Coloma | - | Zrinjski Mostar | 1:3 (1:0) | ||
| R | Zrinjski Mostar | - | UE Santa Coloma | 1:0 (0:0) | ||
| U: 04.07.2013 17:30 | R: 11.07.2013 18:30 | Winnaars: Zrinjski Mostar | ||||
| U | FK Čelik Nikšić | - | Budapest Honvéd | 1:4 (1:2) | ||
| R | Budapest Honvéd | - | FK Čelik Nikšić | 9:0 (3:0) | ||
| U: 04.07.2013 17:30 | R: 11.07.2013 20:30 | Winnaars: Budapest Honvéd | ||||
| U | FK Teteks | - | Pyunik FC | 1:1 (0:0) | ||
| R | Pyunik FC | - | FK Teteks | 1:0 (0:0) | ||
| U: 04.07.2013 17:45 | R: 11.07.2013 17:00 | Winnaars: Pyunik FC | ||||
| U | Hibernians FC | - | Vojvodina | 1:4 (0:2) | ||
| R | Vojvodina | - | Hibernians FC | 3:2 (1:1) | ||
| U: 04.07.2013 18:00 | R: 11.07.2013 20:30 | Winnaars: Vojvodina | ||||
| U | Inter Baku | - | IFK Mariehamn | 1:1 (1:0) | ||
| R | IFK Mariehamn | - | Inter Baku | 0:2 (0:1) | ||
| U: 04.07.2013 18:00 | R: 11.07.2013 19:00 | Winnaars: Inter Baku | ||||
| U | Jeunesse Esch | - | TPS Turku | 2:0 (1:0) | ||
| R | TPS Turku | - | Jeunesse Esch | 2:1 (1:0) | ||
| U: 04.07.2013 18:00 | R: 09.07.2013 18:00 | Winnaars: Jeunesse Esch | ||||
| U | FK Kruoja Pakruojis | - | Dinamo Minsk | 0:3 (0:0) | ||
| R | Dinamo Minsk | - | FK Kruoja Pakruojis | 5:0 (4:0) | ||
| U: 04.07.2013 18:00 | R: 11.07.2013 18:00 | Winnaars: Dinamo Minsk | ||||
| U | FC Flora | - | FK Kukësi | 1:1 (1:0) | ||
| R | FK Kukësi | - | FC Flora | 0:0 (0:0) | ||
| U: 04.07.2013 18:30 | R: 11.07.2013 19:30 | Winnaars: FK Kukësi | ||||
| U | FK Sūduva | - | FK Turnovo | 2:2 (1:2) | ||
| R | FK Turnovo | - | FK Sūduva | 5:4 (0:1, 2:2, 2:2) d.p. | ||
| U: 04.07.2013 18:45 | R: 11.07.2013 17:30 | Winnaars: FK Turnovo | ||||
| U | FC Tiraspol | - | Skonto FC | 0:1 (0:0) | ||
| R | Skonto FC | - | FC Tiraspol | 4:2 (0:0, 0:1, 0:1) d.p. | ||
| U: 04.07.2013 19:00 | R: 11.07.2013 18:00 | Winnaars: Skonto FC | ||||
| U | KF Laçi | - | FC Differdange 03 | 0:1 (0:0) | ||
| R | FC Differdange 03 | - | KF Laçi | 2:1 (0:1) | ||
| U: 04.07.2013 19:00 | R: 09.07.2013 19:30 | Winnaars: FC Differdange 03 | ||||
| U | Tromsø IL | - | NK Celje | 1:2 (1:0) | ||
| R | NK Celje | - | Tromsø IL | 0:2 (0:2) | ||
| U: 04.07.2013 19:00 | R: 11.07.2013 19:00 | Winnaars: Tromsø IL | ||||
| U | Torpedo Kutaisi | - | MŠK Žilina | 0:3 (0:0) | ||
| R | MŠK Žilina | - | Torpedo Kutaisi | 3:3 (2:1) | ||
| U: 04.07.2013 19:00 | R: 11.07.2013 17:30 | Winnaars: MŠK Žilina | ||||
| U | Víkingur | - | Inter Turku | 1:1 (0:1) | ||
| R | Inter Turku | - | Víkingur | 0:1 (0:0) | ||
| U: 04.07.2013 20:00 | R: 11.07.2013 18:00 | Winnaars: Víkingur | ||||
| U | KF Teuta Durrës | - | Dacia Chişinău | 3:1 (1:1) | ||
| R | Dacia Chişinău | - | KF Teuta Durrës | 2:0 (1:0) | ||
| U: 04.07.2013 20:00 | R: 11.07.2013 19:15 | Winnaars: Dacia Chişinău | ||||
| U | Airbus UK | - | FK Ventspils | 1:1 (0:0) | ||
| R | FK Ventspils | - | Airbus UK | 0:0 (0:0) | ||
| U: 04.07.2013 20:00 | R: 11.07.2013 17:00 | Winnaars: FK Ventspils | ||||
| U | Levski Sofia | - | Irtysh Pavlodar | 0:0 (0:0) | ||
| R | Irtysh Pavlodar | - | Levski Sofia | 2:0 (2:0) | ||
| U: 04.07.2013 20:00 | R: 11.07.2013 15:00 | Winnaars: Irtysh Pavlodar | ||||
| U | Prestatyn Town | - | FK Liepājas Metalurgs | 1:2 (1:1) | ||
| R | FK Liepājas Metalurgs | - | Prestatyn Town | 3:4 (1:0, 1:2, 1:2) d.p. | ||
| U: 04.07.2013 20:00 | R: 11.07.2013 18:00 | Winnaars: Prestatyn Town | ||||
| U | VMFD Žalgiris | - | St Patrick's Athletic | 2:2 (1:0) | ||
| R | St Patrick's Athletic | - | VMFD Žalgiris | 1:2 (0:1) | ||
| U: 04.07.2013 20:10 | R: 11.07.2013 20:45 | Winnaars: VMFD Žalgiris | ||||
| U | FK Sarajevo | - | AC Libertas | 1:0 (1:0) | ||
| R | AC Libertas | - | FK Sarajevo | 1:2 (1:2) | ||
| U: 04.07.2013 20:30 | R: 11.07.2013 21:00 | Winnaars: FK Sarajevo | ||||
| U | Videoton FC | - | Mladost Podgorica | 2:1 (2:1) | ||
| R | Mladost Podgorica | - | Videoton FC | 1:0 (0:0) | ||
| U: 04.07.2013 20:30 | R: 11.07.2013 17:30 | Winnaars: Mladost Podgorica | ||||
| U | FK Rudar Pljevlja | - | Mika FC | 1:0 (1:0) | ||
| R | Mika FC | - | FK Rudar Pljevlja | 1:1 (1:0) | ||
| U: 04.07.2013 20:30 | R: 09.07.2013 15:30 | Winnaars: FK Rudar Pljevlja | ||||
| U | NK Domžale | - | Astra Giurgiu | 0:1 (0:0) | ||
| R | Astra Giurgiu | - | NK Domžale | 2:0 (0:0) | ||
| U: 04.07.2013 20:45 | R: 11.07.2013 20:00 | Winnaars: Astra Giurgiu | ||||
| U | Drogheda United | - | Malmö FF | 0:0 (0:0) | ||
| R | Malmö FF | - | Drogheda United | 2:0 (1:0) | ||
| U: 04.07.2013 20:45 | R: 11.07.2013 19:00 | Winnaars: Malmö FF | ||||
| U | Crusaders FC | - | Rosenborg BK | 1:2 (1:1) | ||
| R | Rosenborg BK | - | Crusaders FC | 7:2 (2:0) | ||
| U: 04.07.2013 20:45 | R: 11.07.2013 19:00 | Winnaars: Rosenborg BK | ||||
| U | SP La Fiorita | - | Valletta FC | 0:3 (0:1) | ||
| R | Valletta FC | - | SP La Fiorita | 1:0 (0:0) | ||
| U: 04.07.2013 21:00 | R: 11.07.2013 18:00 | Winnaars: Valletta FC | ||||
| U | KR Reykjavík | - | Glentoran FC | 0:0 (0:0) | ||
| R | Glentoran FC | - | KR Reykjavík | 0:3 (0:1) | ||
| U: 04.07.2013 21:15 | R: 11.07.2013 20:30 | Winnaars: KR Reykjavík | ||||
| U | Breiðablik | - | FC Santa Coloma | 4:0 (3:0) | ||
| R | FC Santa Coloma | - | Breiðablik | 0:0 (0:0) | ||
| U: 04.07.2013 21:15 | R: 11.07.2013 17:30 | Winnaars: Breiðablik | ||||
| U | ÍBV Vestmannaeyjar | - | HB Tórshavn | 1:1 (1:0) | ||
| R | HB Tórshavn | - | ÍBV Vestmannaeyjar | 0:1 (0:0) | ||
| U: 04.07.2013 21:30 | R: 11.07.2013 20:00 | Winnaars: ÍBV Vestmannaeyjar | ||||
