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| U | Bangor City | - | Gloria Bistrița (old) | 0:1 (0:0) | ||
| R | Gloria Bistrița (old) | - | Bangor City | 5:2 (1:1) | ||
| U: 21.06.2003 16:00 | R: 28.06.2003 15:00 | Winnaars: Gloria Bistrița (old) | ||||
| U | Shakhter Soligorsk | - | Omagh Town FC | 1:0 (1:0) | ||
| R | Omagh Town FC | - | Shakhter Soligorsk | 1:7 (1:4) | ||
| U: 21.06.2003 17:00 | R: 28.06.2003 18:00 | Winnaars: Shakhter Soligorsk | ||||
| U | FK Partizani | - | Maccabi Netanya | 2:0 (2:0) | ||
| R | Maccabi Netanya | - | FK Partizani | 3:1 (1:1) | ||
| U: 21.06.2003 18:00 | R: 28.06.2003 17:00 | Winnaars: FK Partizani | ||||
| U | 1. FC Brno | - | FC Kotayk | 1:0 (1:0) | ||
| R | FC Kotayk | - | 1. FC Brno | 3:2 (1:0) | ||
| U: 21.06.2003 18:00 | R: 28.06.2003 16:00 | Winnaars: 1. FC Brno | ||||
| U | FC Dinaburg | - | FC Wil 1900 | 1:0 (1:0) | ||
| R | FC Wil 1900 | - | FC Dinaburg | 2:0 (2:0) | ||
| U: 21.06.2003 18:00 | R: 29.06.2003 18:00 | Winnaars: FC Wil 1900 | ||||
| U | ZTS Dubnica | - | Olympiakos Nikosia | 3:0 (1:0) | ||
| R | Olympiakos Nikosia | - | ZTS Dubnica | 1:4 (0:3) | ||
| U: 21.06.2003 18:00 | R: 28.06.2003 19:00 | Winnaars: ZTS Dubnica | ||||
| U | Dacia Chişinău | - | GÍ Gøta | 4:1 (1:0) | ||
| R | GÍ Gøta | - | Dacia Chişinău | 0:1 (0:0) | ||
| U: 21.06.2003 18:00 | R: 28.06.2003 20:00 | Winnaars: Dacia Chişinău | ||||
| U | OFK Beograd | - | JK Narva Trans | geannuleerd | ||
| R | JK Narva Trans | - | OFK Beograd | 3:5 (3:2, 3:3) n.v. | ||
| U: 21.06.2003 18:15 | R: 29.06.2003 16:00 | Winnaars: OFK Beograd | ||||
| U | Sloboda Tuzla | - | KA Akureyri | 1:1 (0:0) | ||
| R | KA Akureyri | - | Sloboda Tuzla | 2:3 (0:1, 1:1, 1:1) d.p. | ||
| U: 21.06.2003 19:00 | R: 28.06.2003 17:00 | Winnaars: Sloboda Tuzla | ||||
| U | Győri ETO FC | - | Ethnikos Achna | 1:1 (0:1) | ||
| R | Ethnikos Achna | - | Győri ETO FC | 2:2 (2:1) | ||
| U: 21.06.2003 20:00 | R: 28.06.2003 16:00 | Winnaars: Győri ETO FC | ||||
| U | Odra Wodzisław | - | Shamrock Rovers | 1:2 (0:0) | ||
| R | Shamrock Rovers | - | Odra Wodzisław | 1:0 (0:0) | ||
| U: 21.06.2003 20:00 | R: 29.06.2003 16:15 | Winnaars: Shamrock Rovers | ||||
| U | FC Encamp | - | Lierse SK | 0:3 (0:2) | ||
| R | Lierse SK | - | FC Encamp | 4:1 (2:1) | ||
| U: 22.06.2003 12:00 | R: 29.06.2003 18:00 | Winnaars: Lierse SK | ||||
| U | FK Zalgiris | - | Örgryte IS | 1:1 (0:0) | ||
| R | Örgryte IS | - | FK Zalgiris | 3:0 (0:0) | ||
| U: 22.06.2003 16:00 | R: 28.06.2003 15:00 | Winnaars: Örgryte IS | ||||
| U | Sport Line Koper | - | NK Zagreb | 1:0 (0:0) | ||
| R | NK Zagreb | - | Sport Line Koper | 2:2 (0:1) | ||
| U: 22.06.2003 17:30 | R: 28.06.2003 17:30 | Winnaars: Sport Line Koper | ||||
| U | FK Sutjeska | - | Union Luxembourg | 3:0 (0:0) | ||
| R | Union Luxembourg | - | FK Sutjeska | 1:1 (0:1) | ||
| U: 22.06.2003 17:30 | R: 29.06.2003 17:00 | Winnaars: FK Sutjeska | ||||
| U | AC Allianssi | - | Hibernians FC | 1:0 (0:0) | ||
| R | Hibernians FC | - | AC Allianssi | 1:1 (1:0) | ||
| U: 22.06.2003 17:30 | R: 28.06.2003 17:30 | Winnaars: AC Allianssi | ||||
| U | SV PlusCity Pasching | - | WIT Georgia | 1:0 (0:0) | ||
| R | WIT Georgia | - | SV PlusCity Pasching | 2:1 (0:0) | ||
| U: 22.06.2003 18:00 | R: 28.06.2003 15:00 | Winnaars: SV PlusCity Pasching | ||||
| U | Spartak Trnava | - | FK Pobeda | 1:5 (1:3) | ||
| R | FK Pobeda | - | Spartak Trnava | 2:1 (1:0) | ||
| U: 22.06.2003 18:00 | R: 28.06.2003 17:30 | Winnaars: FK Pobeda | ||||
| U | Videoton FC | - | Marek Dupnitza | 2:2 (2:0) | ||
| R | Marek Dupnitza | - | Videoton FC | 3:2 (2:0, 2:2) n.v. | ||
| U: 22.06.2003 18:00 | R: 29.06.2003 16:30 | Winnaars: Marek Dupnitza | ||||
| U | Tampere United | - | Ceahlăul Piatra Neamt | 1:0 (1:0) | ||
| R | Ceahlăul Piatra Neamt | - | Tampere United | 2:1 (1:0) | ||
| U: 22.06.2003 18:00 | R: 29.06.2003 17:00 | Winnaars: Tampere United | ||||
| U | Polonia Warszawa | - | Tobyl Kostanay | 0:3 (0:1) | ||
| R | Tobyl Kostanay | - | Polonia Warszawa | 2:1 (0:1) | ||
| U: 22.06.2003 18:00 | R: 29.06.2003 14:00 | Winnaars: Tobyl Kostanay | ||||
