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| 24.04.2009 | 18:00 | Rot Weiss Ahlen | - | MSV Duisburg | 0:2 (0:2) | |
| 18:00 | FC St. Pauli | - | SC Freiburg | 1:2 (1:0) | ||
| 18:00 | SpVgg Greuther Fürth | - | FC Augsburg | 2:1 (2:0) | ||
| 26.04.2009 | 14:00 | FSV Frankfurt | - | 1. FC Nürnberg | 2:1 (1:1) | |
| 14:00 | FC Ingolstadt 04 | - | 1. FSV Mainz 05 | 3:4 (1:1) | ||
| 14:00 | TuS Koblenz | - | Alemannia Aachen | 0:2 (0:0) | ||
| 14:00 | 1. FC Kaiserslautern | - | SV Wehen Wiesbaden | 1:0 (0:0) | ||
| 14:00 | Rot-Weiß Oberhausen | - | TSV 1860 München | 1:1 (1:1) | ||
| 27.04.2009 | 20:15 | VfL Osnabrück | - | Hansa Rostock | 0:0 (0:0) |
| # | Team | GS. | W. | G. | V. | Dp. | Ds. | P. | |
|---|---|---|---|---|---|---|---|---|---|
| 1 |
|
SC Freiburg | 29 | 18 | 4 | 7 | 47:29 | 18 | 58 |
| 2 |
|
1. FSV Mainz 05 | 29 | 14 | 9 | 6 | 52:34 | 18 | 51 |
| 3 |
|
SpVgg Greuther Fürth | 29 | 15 | 6 | 8 | 55:39 | 16 | 51 |
| 4 |
|
1. FC Nürnberg | 29 | 13 | 10 | 6 | 45:27 | 18 | 49 |
| 5 |
|
1. FC Kaiserslautern | 29 | 14 | 7 | 8 | 45:33 | 12 | 49 |
| 6 |
|
Alemannia Aachen | 29 | 14 | 6 | 9 | 49:33 | 16 | 48 |
| 7 |
|
MSV Duisburg | 29 | 11 | 11 | 7 | 44:31 | 13 | 44 |
| 8 |
|
FC St. Pauli | 29 | 11 | 6 | 12 | 46:56 | -10 | 39 |
| 9 |
|
Rot-Weiß Oberhausen | 29 | 10 | 7 | 12 | 31:46 | -15 | 37 |
| 10 |
|
TSV 1860 München | 29 | 9 | 9 | 11 | 39:37 | 2 | 36 |
| 11 |
|
FSV Frankfurt | 29 | 9 | 9 | 11 | 31:38 | -7 | 36 |
| 12 |
|
FC Augsburg | 29 | 9 | 8 | 12 | 36:37 | -1 | 35 |
| 13 |
|
TuS Koblenz | 29 | 10 | 7 | 12 | 42:44 | -2 | 34 |
| 14 |
|
Rot Weiss Ahlen | 29 | 9 | 6 | 14 | 30:50 | -20 | 33 |
| 15 |
|
Hansa Rostock | 29 | 7 | 10 | 12 | 40:45 | -5 | 31 |
| 16 |
|
VfL Osnabrück | 29 | 6 | 11 | 12 | 35:51 | -16 | 29 |
| 17 |
|
FC Ingolstadt 04 | 29 | 6 | 9 | 14 | 33:49 | -16 | 27 |
| 18 |
|
SV Wehen Wiesbaden | 29 | 4 | 9 | 16 | 25:46 | -21 | 21 |
| Promotie | |
| Promotie en degradatie | |
| Promotie en degradatie | |
| Degradatie |
