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| 23.09.2016 | 19:00 | TSV Buchbach | - | SpVgg Bayern Hof | 3:0 (2:0) | |
| 19:00 | TSV 1860 Rosenheim | - | 1. FC Schweinfurt 05 | 4:2 (2:0) | ||
| 19:30 | FC Memmingen | - | FC Augsburg II | 2:2 (2:1) | ||
| 24.09.2016 | 13:00 | VfR Garching | - | SV Schalding-Heining | 3:1 (2:0) | |
| 14:00 | SpVgg Unterhaching | - | Wacker Burghausen | 2:0 (0:0) | ||
| 14:00 | SpVgg Greuther Fürth II | - | Bayern München II | 1:1 (0:0) | ||
| 14:00 | TSV 1860 München II | - | 1. FC Nürnberg II | 1:4 (1:2) | ||
| 14:00 | SpVgg Bayreuth | - | FV Illertissen | 4:0 (2:0) | ||
| 15:30 | FC Ingolstadt 04 II | - | SV Seligenporten | 2:1 (0:0) |
| # | Team | GS. | W. | G. | V. | Dp. | Ds. | P. | |
|---|---|---|---|---|---|---|---|---|---|
| 1 |
|
SpVgg Unterhaching | 12 | 10 | 2 | 0 | 34:7 | 27 | 32 |
| 2 |
|
Bayern München II | 12 | 6 | 5 | 1 | 19:12 | 7 | 23 |
| 3 |
|
1. FC Nürnberg II | 12 | 6 | 2 | 4 | 27:23 | 4 | 20 |
| 4 |
|
VfR Garching | 12 | 6 | 2 | 4 | 22:20 | 2 | 20 |
| 5 |
|
FC Augsburg II | 12 | 4 | 6 | 2 | 26:15 | 11 | 18 |
| 6 |
|
SpVgg Bayreuth | 12 | 5 | 3 | 4 | 24:19 | 5 | 18 |
| 7 |
|
1. FC Schweinfurt 05 | 12 | 5 | 2 | 5 | 19:23 | -4 | 17 |
| 8 |
|
SpVgg Greuther Fürth II | 12 | 4 | 4 | 4 | 18:15 | 3 | 16 |
| 9 |
|
TSV 1860 Rosenheim | 12 | 5 | 1 | 6 | 13:16 | -3 | 16 |
| 10 |
|
FC Memmingen | 12 | 3 | 5 | 4 | 21:17 | 4 | 14 |
| 11 |
|
FC Ingolstadt 04 II | 12 | 3 | 5 | 4 | 20:23 | -3 | 14 |
| 12 |
|
FV Illertissen | 12 | 4 | 2 | 6 | 17:24 | -7 | 14 |
| 13 |
|
Wacker Burghausen | 12 | 3 | 4 | 5 | 18:22 | -4 | 13 |
| 14 |
|
TSV Buchbach | 12 | 3 | 3 | 6 | 16:21 | -5 | 12 |
| 15 |
|
SV Schalding-Heining | 12 | 2 | 5 | 5 | 17:19 | -2 | 11 |
| 16 |
|
SV Seligenporten | 12 | 3 | 2 | 7 | 14:34 | -20 | 11 |
| 17 |
|
SpVgg Bayern Hof | 12 | 1 | 1 | 10 | 15:33 | -18 | 4 |
| 18 |
|
TSV 1860 München II | 12 | 7 | 2 | 3 | 0:0 | -7 | -40 |
| Play-offs | |
| Promotie en degradatie | |
| Degradatie |
