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| 30.09.2012 | 06:00 | Mito HollyHock | - | Giravanz Kitakyushu | 3:1 (3:1) | |
| 06:00 | Tochigi SC | - | Ventforet Kofu | 1:2 (0:1) | ||
| 06:00 | Gainare Tottori | - | Thespakusatsu Gunma | 2:0 (0:0) | ||
| 07:00 | FC Machida Zelvia | - | Oita Trinita | 1:3 (1:2) | ||
| 08:00 | Avispa Fukuoka | - | Yokohama FC | 1:1 (0:0) | ||
| 09:00 | Montedio Yamagata | - | Tokyo Verdy | 1:1 (0:0) | ||
| 09:00 | Ehime FC | - | JEF United Chiba | 2:2 (0:1) | ||
| 11:00 | Kataller Toyama | - | Fagiano Okayama | 1:1 (0:0) | ||
| 01.10.2012 | 12:00 | Shonan Bellmare | - | Roasso Kumamoto | 1:2 (0:1) | |
| 18.10.2012 | 12:00 | Matsumoto Yamaga | - | FC Gifu | 1:0 (0:0) | |
| 25.10.2012 | 12:00 | Tokushima Vortis | - | Kyoto Sanga FC | 2:4 (0:2) |
| » Stand | Thuis | uit | Heenronde | Returnronde |
| # | Team | GS. | W. | G. | V. | Dp. | Ds. | P. | |
|---|---|---|---|---|---|---|---|---|---|
| 1 |
|
Ventforet Kofu | 36 | 21 | 11 | 4 | 53:29 | 24 | 74 |
| 2 |
|
Kyoto Sanga FC | 36 | 20 | 4 | 12 | 54:40 | 14 | 64 |
| 3 |
|
Shonan Bellmare | 36 | 17 | 12 | 7 | 57:40 | 17 | 63 |
| 4 |
|
Oita Trinita | 36 | 18 | 7 | 11 | 52:36 | 16 | 61 |
| 5 |
|
JEF United Chiba | 36 | 17 | 8 | 11 | 50:30 | 20 | 59 |
| 6 |
|
Tokyo Verdy | 36 | 18 | 5 | 13 | 58:39 | 19 | 59 |
| 7 |
|
Yokohama FC | 36 | 17 | 7 | 12 | 51:40 | 11 | 58 |
| 8 |
|
Montedio Yamagata | 36 | 15 | 12 | 9 | 50:40 | 10 | 57 |
| 9 |
|
Tochigi SC | 36 | 16 | 8 | 12 | 42:36 | 6 | 56 |
| 10 |
|
Giravanz Kitakyushu | 36 | 15 | 7 | 14 | 46:43 | 3 | 52 |
| 11 |
|
Fagiano Okayama | 36 | 13 | 13 | 10 | 33:31 | 2 | 52 |
| 12 |
|
Mito HollyHock | 36 | 15 | 7 | 14 | 43:42 | 1 | 52 |
| 13 |
|
Matsumoto Yamaga | 36 | 13 | 12 | 11 | 40:36 | 4 | 51 |
| 14 |
|
Roasso Kumamoto | 36 | 12 | 10 | 14 | 35:43 | -8 | 46 |
| 15 |
|
Tokushima Vortis | 36 | 11 | 10 | 15 | 37:41 | -4 | 43 |
| 16 |
|
Thespakusatsu Gunma | 36 | 11 | 10 | 15 | 29:36 | -7 | 43 |
| 17 |
|
Avispa Fukuoka | 36 | 9 | 13 | 14 | 48:57 | -9 | 40 |
| 18 |
|
Ehime FC | 36 | 9 | 11 | 16 | 39:43 | -4 | 38 |
| 19 |
|
FC Gifu | 36 | 7 | 11 | 18 | 23:47 | -24 | 32 |
| 20 |
|
Gainare Tottori | 36 | 9 | 4 | 23 | 29:73 | -44 | 31 |
| 21 |
|
Kataller Toyama | 36 | 6 | 11 | 19 | 32:51 | -19 | 29 |
| 22 |
|
FC Machida Zelvia | 36 | 6 | 9 | 21 | 28:56 | -28 | 27 |
| Promotie | |
| Play-offs | |
| Promotie en degradatie | |
| Degradatie |
