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| U | Kampala City Council FC | - | SuperSport United | 2:1 | ||
| R | SuperSport United | - | Kampala City Council FC | 1:1 | ||
| U: 13.03.2009 14:00 | R: 04.04.2009 20:00 | Winnaars: Kampala City Council FC | ||||
| U | Al Ittihad Tripolis | - | Al Merrikh SC | 1:1 | ||
| R | Al Merrikh SC | - | Al Ittihad Tripolis | 3:0 | ||
| U: 13.03.2009 16:30 | R: 04.04.2009 19:00 | Winnaars: Al Merrikh SC | ||||
| U | AS Douanes | - | Kano Pillars | 1:1 | ||
| R | Kano Pillars | - | AS Douanes | 0:0 | ||
| U: 14.03.2009 | R: 04.04.2009 | Winnaars: Kano Pillars | ||||
| U | Ajax Cape Town | - | Monomotapa United | 3:2 | ||
| R | Monomotapa United | - | Ajax Cape Town | 2:1 | ||
| U: 14.03.2009 15:00 | R: 05.04.2009 15:00 | Winnaars: Monomotapa United | ||||
| U | CD 1º de Agosto | - | Canon Yaoundé | 0:1 | ||
| R | Canon Yaoundé | - | CD 1º de Agosto | 4:5 d.p. | ||
| U: 14.03.2009 16:00 | R: 06.04.2009 16:00 | Winnaars: CD 1º de Agosto | ||||
| U | ASEC Mimosas | - | EF Ouagadougou | 2:0 | ||
| R | EF Ouagadougou | - | ASEC Mimosas | 0:1 | ||
| U: 14.03.2009 16:30 | R: 05.04.2009 20:00 | Winnaars: ASEC Mimosas | ||||
| U | Étoile du Sahel | - | ASO Chlef | 2:1 | ||
| R | ASO Chlef | - | Étoile du Sahel | 0:0 | ||
| U: 14.03.2009 17:00 | R: 03.04.2009 20:00 | Winnaars: Étoile du Sahel | ||||
| U | Heartland FC | - | FAR de Rabat | 3:1 | ||
| R | FAR de Rabat | - | Heartland FC | 1:1 | ||
| U: 15.03.2009 15:00 | R: 04.04.2009 17:00 | Winnaars: Heartland FC | ||||
| U | Coton Sport Garoua | - | DC Motema Pembe | 2:1 | ||
| R | DC Motema Pembe | - | Coton Sport Garoua | 2:3 | ||
| U: 15.03.2009 15:00 | R: 04.04.2009 | Winnaars: Coton Sport Garoua | ||||
| U | TP Mazembe | - | Petro Atlético | 3:0 | ||
| R | Petro Atlético | - | TP Mazembe | 1:2 | ||
| U: 15.03.2009 15:30 | R: 04.04.2009 | Winnaars: TP Mazembe | ||||
| U | Club Africain | - | Djoliba AC | 1:2 | ||
| R | Djoliba AC | - | Club Africain | 0:1 | ||
| U: 15.03.2009 15:30 | R: 05.04.2009 18:30 | Winnaars: Djoliba AC | ||||
| U | Asante Kotoko | - | Ittihad Khémisset | 3:1 | ||
| R | Ittihad Khémisset | - | Asante Kotoko | 2:0 | ||
| U: 15.03.2009 16:00 | R: 05.04.2009 16:30 | Winnaars: Ittihad Khémisset | ||||
| U | JS Kabylie | - | Al Ahly Tripolis | 1:2 | ||
| R | Al Ahly Tripolis | - | JS Kabylie | 1:0 | ||
| U: 15.03.2009 16:00 | R: 04.04.2009 19:00 | Winnaars: Al Ahly Tripolis | ||||
| U | Africa Sports | - | ZESCO United | 0:0 | ||
| R | ZESCO United | - | Africa Sports | 1:0 | ||
| U: 15.03.2009 16:30 | R: 04.04.2009 | Winnaars: ZESCO United | ||||
| U | Al Ahly SC | - | Young Africans | 3:0 | ||
| R | Young Africans | - | Al Ahly SC | 0:1 | ||
| U: 15.03.2009 18:00 | R: 04.04.2009 14:00 | Winnaars: Al Ahly SC | ||||
| U | Al Hilal Omdurman | - | US Stade Tamponnaise | 3:1 | ||
| R | US Stade Tamponnaise | - | Al Hilal Omdurman | 2:1 | ||
| U: 15.03.2009 18:00 | R: 05.04.2009 15:00 | Winnaars: Al Hilal Omdurman | ||||
