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| 05.06.1999 | SD Eibar | - | FC Barcelona B | 2:0 | ||
| SD Compostela | - | Málaga CF | 3:3 | |||
| UD Las Palmas | - | CA Osasuna | 1:0 | |||
| Atlético Madrid B | - | CD Leganés | 1:1 | |||
| 06.06.1999 | UE Lleida | - | CD Ourense | 2:1 | ||
| CD Toledo | - | Albacete | 0:2 | |||
| Rayo Vallecano | - | CP Mérida | 1:0 | |||
| CD Logroñés | - | Recreativo Huelva | 4:1 | |||
| CD Numancia | - | Sevilla FC | 3:2 | |||
| Sporting Gijón | - | Hércules CF | 2:0 | |||
| RCD Mallorca B | - | CD Badajoz | 3:3 |
| » Stand | Thuis | uit | Heenronde | Returnronde |
| # | Team | GS. | W. | G. | V. | Dp. | Ds. | P. | |
|---|---|---|---|---|---|---|---|---|---|
| 1 |
|
Málaga CF | 40 | 21 | 13 | 6 | 70:45 | 25 | 76 |
| 2 |
|
Atlético Madrid B | 40 | 19 | 11 | 10 | 67:50 | 17 | 68 |
| 3 |
|
CD Numancia | 40 | 19 | 10 | 11 | 63:40 | 23 | 67 |
| 4 |
|
Rayo Vallecano | 40 | 18 | 13 | 9 | 61:48 | 13 | 67 |
| 5 |
|
Sevilla FC | 40 | 18 | 11 | 11 | 60:49 | 11 | 65 |
| 6 |
|
CD Toledo | 40 | 18 | 11 | 11 | 53:44 | 9 | 65 |
| 7 |
|
UD Las Palmas | 40 | 15 | 17 | 8 | 51:37 | 14 | 62 |
| 8 |
|
UE Lleida | 40 | 15 | 14 | 11 | 49:45 | 4 | 59 |
| 9 |
|
SD Compostela | 40 | 15 | 13 | 12 | 56:48 | 8 | 58 |
| 10 |
|
Sporting Gijón | 40 | 15 | 11 | 14 | 43:41 | 2 | 56 |
| 11 |
|
Recreativo Huelva | 40 | 13 | 16 | 11 | 38:31 | 7 | 55 |
| 12 |
|
CA Osasuna | 40 | 14 | 12 | 14 | 41:45 | -4 | 54 |
| 13 |
|
CP Mérida | 40 | 13 | 14 | 13 | 43:38 | 5 | 53 |
| 14 |
|
Albacete | 40 | 12 | 14 | 14 | 36:38 | -2 | 50 |
| 15 |
|
CD Badajoz | 40 | 12 | 14 | 14 | 33:36 | -3 | 50 |
| 16 |
|
CD Logroñés | 40 | 12 | 11 | 17 | 47:55 | -8 | 47 |
| 17 |
|
CD Leganés | 40 | 10 | 16 | 14 | 36:42 | -6 | 46 |
| 18 |
|
RCD Mallorca B | 40 | 12 | 10 | 18 | 49:58 | -9 | 46 |
| 19 |
|
FC Barcelona B | 40 | 12 | 5 | 23 | 46:64 | -18 | 41 |
| 20 |
|
SD Eibar | 40 | 11 | 8 | 21 | 38:56 | -18 | 41 |
| 21 |
|
Hércules CF | 40 | 9 | 10 | 21 | 35:63 | -28 | 37 |
| 22 |
|
CD Ourense | 40 | 7 | 6 | 27 | 35:77 | -42 | 27 |
