| 1. Ronde | 16.08.2008 | Hertha Zehlendorf [B-jun] | - | FC St. Pauli [B-jun] | 0:1 | ||||
| 5. Ronde | 27.09.2008 | VfL Osnabrück [B-jun] | - | FC St. Pauli [B-jun] | 2:1 | ||||
| 6. Ronde | 04.10.2008 | FC St. Pauli [B-jun] | - | Rot-Weiß Erfurt [B-jun] | 1:1 | ||||
| 14. Ronde | 12.10.2008 | FC St. Pauli [B-jun] | - | Hertha Zehlendorf [B-jun] | 1:2 | ||||
| 8. Ronde | 01.11.2008 | FC St. Pauli [B-jun] | - | TeBe Berlin [B-jun] | 0:2 | ||||
| 9. Ronde | 09.11.2008 | Hannover 96 [B-jun] | - | FC St. Pauli [B-jun] | 0:3 | ||||
| 10. Ronde | 15.11.2008 | FC St. Pauli [B-jun] | - | Energie Cottbus [B-jun] | 0:1 | ||||
| 11. Ronde | 30.11.2008 | Holstein Kiel [B-jun] | - | FC St. Pauli [B-jun] | 0:0 | ||||
| 13. Ronde | 14.12.2008 | FC St. Pauli [B-jun] | - | Concordia Hamburg [B-jun] | 5:0 | ||||
| 20. Ronde | 05.04.2009 | FC St. Pauli [B-jun] | - | Werder Bremen [B-jun] | 1:8 | ||||
| 22. Ronde | 26.04.2009 | FC St. Pauli [B-jun] | - | Hannover 96 [B-jun] | 2:1 | ||||
| 23. Ronde | 17.05.2009 | Energie Cottbus [B-jun] | - | FC St. Pauli [B-jun] | 3:1 | ||||
| 24. Ronde | 24.05.2009 | FC St. Pauli [B-jun] | - | Holstein Kiel [B-jun] | 6:1 |
Duitsland