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| 13.10.2006 | 19:30 | VfB Lübeck | - | Dynamo Dresden | 1:0 (0:0) | |
| 14.10.2006 | 14:00 | Kickers Emden | - | Holstein Kiel | 0:0 (0:0) | |
| 14:00 | SV Wilhelmshaven | - | Rot Weiss Ahlen | 4:1 (2:1) | ||
| 14:00 | Werder Bremen II | - | Rot-Weiß Erfurt | 0:1 (0:1) | ||
| 14:00 | 1. FC Union Berlin | - | VfL Osnabrück | 2:2 (1:1) | ||
| 14:00 | Borussia Dortmund II | - | 1. FC Magdeburg | 1:3 (1:0) | ||
| 14:00 | Bayer Leverkusen II | - | Bor. Mönchengladbach II | 2:0 (0:0) | ||
| 15.10.2006 | 14:00 | FC St. Pauli | - | Hamburger SV II | 0:0 (0:0) | |
| 14:00 | Hertha BSC II | - | Fortuna Düsseldorf | 1:2 (0:1) |
| » Stand | Thuis | uit | Heenronde | Returnronde |
| # | Team | GS. | W. | G. | V. | Dp. | Ds. | P. | |
|---|---|---|---|---|---|---|---|---|---|
| 1 |
|
1. FC Union Berlin | 10 | 6 | 3 | 1 | 16:4 | 12 | 21 |
| 2 |
|
Hamburger SV II | 11 | 6 | 2 | 3 | 15:12 | 3 | 20 |
| 3 |
|
Dynamo Dresden | 10 | 6 | 1 | 3 | 16:12 | 4 | 19 |
| 4 |
|
Fortuna Düsseldorf | 10 | 5 | 3 | 2 | 18:13 | 5 | 18 |
| 5 |
|
Werder Bremen II | 11 | 5 | 3 | 3 | 20:16 | 4 | 18 |
| 6 |
|
VfL Osnabrück | 10 | 5 | 2 | 3 | 15:13 | 2 | 17 |
| 7 |
|
VfB Lübeck | 11 | 5 | 2 | 4 | 12:12 | 0 | 17 |
| 8 |
|
Wuppertaler SV | 10 | 4 | 4 | 2 | 17:9 | 8 | 16 |
| 9 |
|
1. FC Magdeburg | 10 | 5 | 1 | 4 | 13:13 | 0 | 16 |
| 10 |
|
Rot-Weiß Erfurt | 10 | 4 | 2 | 4 | 10:10 | 0 | 14 |
| 11 |
|
Rot Weiss Ahlen | 11 | 4 | 1 | 6 | 15:17 | -2 | 13 |
| 12 |
|
FC St. Pauli | 10 | 3 | 4 | 3 | 11:13 | -2 | 13 |
| 13 |
|
Holstein Kiel | 11 | 3 | 4 | 4 | 16:19 | -3 | 13 |
| 14 |
|
Hertha BSC II | 11 | 4 | 1 | 6 | 12:16 | -4 | 13 |
| 15 |
|
SV Wilhelmshaven | 10 | 3 | 2 | 5 | 14:15 | -1 | 11 |
| 16 |
|
Bayer Leverkusen II | 10 | 3 | 2 | 5 | 11:12 | -1 | 11 |
| 17 |
|
Borussia Dortmund II | 11 | 3 | 1 | 7 | 10:20 | -10 | 10 |
| 18 |
|
Kickers Emden | 10 | 2 | 3 | 5 | 5:9 | -4 | 9 |
| 19 |
|
Bor. Mönchengladbach II | 11 | 1 | 3 | 7 | 7:18 | -11 | 6 |
