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| 11.09.2009 | 19:00 | Jahn Regensburg | - | Kickers Offenbach | 1:1 (1:1) | |
| 12.09.2009 | 14:00 | Dynamo Dresden | - | Holstein Kiel | 3:0 (2:0) | |
| 14:00 | FC Ingolstadt 04 | - | Werder Bremen II | 4:1 (1:1) | ||
| 14:00 | SV Sandhausen | - | Bayern München II | 4:2 (2:1) | ||
| 14:00 | VfB Stuttgart II | - | Rot-Weiß Erfurt | 3:1 (0:1) | ||
| 14:00 | Wuppertaler SV | - | VfL Osnabrück | 0:4 (0:2) | ||
| 14:00 | 1. FC Heidenheim 1846 | - | Borussia Dortmund II | 2:1 (0:0) | ||
| 14:15 | FC Carl Zeiss Jena | - | Wacker Burghausen | 0:0 (0:0) | ||
| 13.09.2009 | 14:00 | SpVgg Unterhaching | - | Eintracht Braunschweig | 2:0 (0:0) | |
| 14:00 | SV Wehen Wiesbaden | - | Erzgebirge Aue | 2:0 (2:0) |
| # | Team | GS. | W. | G. | V. | Dp. | Ds. | P. | |
|---|---|---|---|---|---|---|---|---|---|
| 1 |
|
SV Sandhausen | 9 | 6 | 2 | 1 | 22:11 | 11 | 20 |
| 2 |
|
Jahn Regensburg | 9 | 5 | 3 | 1 | 13:7 | 6 | 18 |
| 3 |
|
Wacker Burghausen | 9 | 5 | 2 | 2 | 13:14 | -1 | 17 |
| 4 |
|
VfL Osnabrück | 9 | 5 | 1 | 3 | 15:8 | 7 | 16 |
| 5 |
|
SpVgg Unterhaching | 9 | 4 | 4 | 1 | 15:12 | 3 | 16 |
| 6 |
|
Kickers Offenbach | 9 | 4 | 3 | 2 | 11:5 | 6 | 15 |
| 7 |
|
FC Carl Zeiss Jena | 9 | 4 | 3 | 2 | 13:9 | 4 | 15 |
| 8 |
|
FC Ingolstadt 04 | 9 | 4 | 1 | 4 | 22:12 | 10 | 13 |
| 9 |
|
VfB Stuttgart II | 9 | 4 | 1 | 4 | 16:12 | 4 | 13 |
| 10 |
|
Eintracht Braunschweig | 9 | 4 | 1 | 4 | 8:10 | -2 | 13 |
| 11 |
|
1. FC Heidenheim 1846 | 9 | 3 | 3 | 3 | 14:16 | -2 | 12 |
| 12 |
|
Rot-Weiß Erfurt | 9 | 3 | 3 | 3 | 12:14 | -2 | 12 |
| 13 |
|
Erzgebirge Aue | 9 | 3 | 3 | 3 | 6:8 | -2 | 12 |
| 14 |
|
Dynamo Dresden | 9 | 3 | 2 | 4 | 8:9 | -1 | 11 |
| 15 |
|
SV Wehen Wiesbaden | 9 | 3 | 1 | 5 | 9:12 | -3 | 10 |
| 16 |
|
Bayern München II | 9 | 2 | 3 | 4 | 12:20 | -8 | 9 |
| 17 |
|
Borussia Dortmund II | 9 | 2 | 2 | 5 | 8:11 | -3 | 8 |
| 18 |
|
Holstein Kiel | 9 | 2 | 1 | 6 | 11:16 | -5 | 7 |
| 19 |
|
Werder Bremen II | 9 | 2 | 1 | 6 | 7:16 | -9 | 7 |
| 20 |
|
Wuppertaler SV | 9 | 1 | 2 | 6 | 8:21 | -13 | 5 |
| Promotie | |
| Promotie en degradatie | |
| Degradatie |
