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| 25.09.2012 | 19:00 | VfB Stuttgart II | - | Hansa Rostock | 0:2 (0:1) | |
| 19:00 | Hallescher FC | - | SV Wehen Wiesbaden | 1:1 (0:0) | ||
| 19:00 | Borussia Dortmund II | - | SV Babelsberg 03 | 0:0 (0:0) | ||
| 19:00 | Alemannia Aachen | - | Preußen Münster | 1:2 (0:0) | ||
| 19:00 | Arminia Bielefeld | - | Chemnitzer FC | 0:0 (0:0) | ||
| 26.09.2012 | 19:00 | Wacker Burghausen | - | 1. FC Heidenheim 1846 | 4:1 (2:0) | |
| 19:00 | VfL Osnabrück | - | SV Darmstadt 98 | 1:0 (0:0) | ||
| 19:00 | Karlsruher SC | - | Rot-Weiß Erfurt | 3:0 (0:0) | ||
| 19:00 | Kickers Offenbach | - | Stuttgarter Kickers | 3:0 (1:0) | ||
| 19:00 | 1. FC Saarbrücken | - | SpVgg Unterhaching | 2:4 (1:2) |
| # | Team | GS. | W. | G. | V. | Dp. | Ds. | P. | |
|---|---|---|---|---|---|---|---|---|---|
| 1 |
|
SpVgg Unterhaching | 11 | 8 | 1 | 2 | 24:15 | 9 | 25 |
| 2 |
|
Preußen Münster | 11 | 7 | 3 | 1 | 22:8 | 14 | 24 |
| 3 |
|
VfL Osnabrück | 11 | 7 | 1 | 3 | 13:7 | 6 | 22 |
| 4 |
|
Arminia Bielefeld | 11 | 6 | 3 | 2 | 17:12 | 5 | 21 |
| 5 |
|
1. FC Heidenheim 1846 | 11 | 5 | 3 | 3 | 20:18 | 2 | 18 |
| 6 |
|
Hansa Rostock | 11 | 5 | 3 | 3 | 16:15 | 1 | 18 |
| 7 |
|
Wacker Burghausen | 11 | 5 | 1 | 5 | 14:14 | 0 | 16 |
| 8 |
|
Chemnitzer FC | 11 | 4 | 3 | 4 | 12:12 | 0 | 15 |
| 9 |
|
Karlsruher SC | 11 | 3 | 5 | 3 | 14:9 | 5 | 14 |
| 10 |
|
Hallescher FC | 11 | 3 | 5 | 3 | 9:9 | 0 | 14 |
| 11 |
|
VfB Stuttgart II | 11 | 4 | 2 | 5 | 13:14 | -1 | 14 |
| 12 |
|
Kickers Offenbach | 11 | 4 | 3 | 4 | 16:14 | 2 | 13 |
| 13 |
|
1. FC Saarbrücken | 11 | 4 | 1 | 6 | 15:19 | -4 | 13 |
| 14 |
|
Stuttgarter Kickers | 11 | 3 | 3 | 5 | 14:13 | 1 | 12 |
| 15 |
|
SV Wehen Wiesbaden | 11 | 1 | 8 | 2 | 13:14 | -1 | 11 |
| 16 |
|
SV Babelsberg 03 | 11 | 3 | 2 | 6 | 9:15 | -6 | 11 |
| 17 |
|
SV Darmstadt 98 | 11 | 2 | 4 | 5 | 10:15 | -5 | 10 |
| 18 |
|
Rot-Weiß Erfurt | 11 | 2 | 3 | 6 | 11:19 | -8 | 9 |
| 19 |
|
Borussia Dortmund II | 11 | 1 | 4 | 6 | 9:23 | -14 | 7 |
| 20 |
|
Alemannia Aachen | 11 | 2 | 4 | 5 | 12:18 | -6 | 5 |
| Promotie | |
| Promotie en degradatie | |
| Degradatie | |
| Degradatie |
