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| 07.10.2016 | 19:00 | Bayern München II | - | FC Augsburg II | 0:0 (0:0) | |
| 19:30 | FC Memmingen | - | 1. FC Schweinfurt 05 | 2:1 (1:0) | ||
| 08.10.2016 | 13:00 | VfR Garching | - | 1. FC Nürnberg II | 3:4 (1:2) | |
| 14:00 | SpVgg Bayreuth | - | Wacker Burghausen | 1:3 (0:2) | ||
| 14:00 | FC Ingolstadt 04 II | - | TSV Buchbach | 1:2 (1:1) | ||
| 14:00 | SpVgg Unterhaching | - | SpVgg Bayern Hof | 4:1 (4:0) | ||
| 14:00 | SpVgg Greuther Fürth II | - | SV Schalding-Heining | 2:1 (1:1) | ||
| 14:00 | TSV 1860 Rosenheim | - | FV Illertissen | 0:1 (0:0) | ||
| 14:00 | TSV 1860 München II | - | SV Seligenporten | 1:1 (0:1) |
| # | Team | GS. | W. | G. | V. | Dp. | Ds. | P. | |
|---|---|---|---|---|---|---|---|---|---|
| 1 |
|
SpVgg Unterhaching | 14 | 12 | 2 | 0 | 41:8 | 33 | 38 |
| 2 |
|
Bayern München II | 14 | 6 | 6 | 2 | 19:13 | 6 | 24 |
| 3 |
|
1. FC Nürnberg II | 14 | 7 | 3 | 4 | 33:28 | 5 | 24 |
| 4 |
|
VfR Garching | 14 | 7 | 2 | 5 | 28:25 | 3 | 23 |
| 5 |
|
FC Augsburg II | 14 | 5 | 7 | 2 | 29:17 | 12 | 22 |
| 6 |
|
FC Memmingen | 14 | 5 | 5 | 4 | 26:20 | 6 | 20 |
| 7 |
|
FV Illertissen | 14 | 6 | 2 | 6 | 20:24 | -4 | 20 |
| 8 |
|
SpVgg Greuther Fürth II | 14 | 5 | 4 | 5 | 22:19 | 3 | 19 |
| 9 |
|
SpVgg Bayreuth | 14 | 5 | 3 | 6 | 26:26 | 0 | 18 |
| 10 |
|
Wacker Burghausen | 14 | 4 | 5 | 5 | 22:24 | -2 | 17 |
| 11 |
|
TSV 1860 Rosenheim | 14 | 5 | 2 | 7 | 15:19 | -4 | 17 |
| 12 |
|
1. FC Schweinfurt 05 | 14 | 5 | 2 | 7 | 21:28 | -7 | 17 |
| 13 |
|
FC Ingolstadt 04 II | 14 | 3 | 6 | 5 | 22:26 | -4 | 15 |
| 14 |
|
TSV Buchbach | 14 | 4 | 3 | 7 | 18:25 | -7 | 15 |
| 15 |
|
SV Seligenporten | 14 | 4 | 3 | 7 | 19:36 | -17 | 15 |
| 16 |
|
SV Schalding-Heining | 14 | 2 | 5 | 7 | 20:24 | -4 | 11 |
| 17 |
|
SpVgg Bayern Hof | 14 | 2 | 1 | 11 | 17:37 | -20 | 7 |
| 18 |
|
TSV 1860 München II | 14 | 7 | 3 | 4 | 0:0 | -9 | -39 |
| Play-offs | |
| Promotie en degradatie | |
| Degradatie |
