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| 03.02.2006 | 19:00 | VfL Bochum | - | LR Ahlen | 3:0 (1:0) | |
| 19:00 | Sportfreunde Siegen | - | 1. FC Saarbrücken | 0:4 (0:1) | ||
| 19:00 | Wacker Burghausen | - | Karlsruher SC | 1:1 (0:1) | ||
| 05.02.2006 | 15:00 | Erzgebirge Aue | - | SC Freiburg | 1:0 (1:0) | |
| 15:00 | SC Paderborn 07 | - | Energie Cottbus | 0:0 (0:0) | ||
| 15:00 | Alemannia Aachen | - | SpVgg Unterhaching | 1:0 (0:0) | ||
| 06.02.2006 | 20:15 | TSV 1860 München | - | SpVgg Greuther Fürth | 2:2 (2:1) | |
| 29.03.2006 | 18:00 | Eintracht Braunschweig | - | Hansa Rostock | 4:1 (3:0) | |
| 18:00 | Kickers Offenbach | - | Dynamo Dresden | 0:0 (0:0) |
| # | Team | GS. | W. | G. | V. | Dp. | Ds. | P. | |
|---|---|---|---|---|---|---|---|---|---|
| 1 |
|
VfL Bochum | 20 | 12 | 5 | 3 | 35:17 | 18 | 41 |
| 2 |
|
Alemannia Aachen | 20 | 12 | 2 | 6 | 38:23 | 15 | 38 |
| 3 |
|
SpVgg Greuther Fürth | 20 | 11 | 4 | 5 | 35:27 | 8 | 37 |
| 4 |
|
Energie Cottbus | 20 | 9 | 5 | 6 | 31:24 | 7 | 32 |
| 5 |
|
Karlsruher SC | 20 | 9 | 5 | 6 | 26:22 | 4 | 32 |
| 6 |
|
SC Freiburg | 20 | 9 | 4 | 7 | 26:23 | 3 | 31 |
| 7 |
|
Wacker Burghausen | 20 | 8 | 7 | 5 | 25:27 | -2 | 31 |
| 8 |
|
SC Paderborn 07 | 20 | 8 | 5 | 7 | 29:19 | 10 | 29 |
| 9 |
|
Hansa Rostock | 20 | 8 | 4 | 8 | 29:28 | 1 | 28 |
| 10 |
|
Erzgebirge Aue | 20 | 7 | 7 | 6 | 18:17 | 1 | 28 |
| 11 |
|
SpVgg Unterhaching | 20 | 8 | 3 | 9 | 29:27 | 2 | 27 |
| 12 |
|
Eintracht Braunschweig | 20 | 8 | 3 | 9 | 24:22 | 2 | 27 |
| 13 |
|
TSV 1860 München | 20 | 7 | 6 | 7 | 27:26 | 1 | 27 |
| 14 |
|
Sportfreunde Siegen | 20 | 5 | 5 | 10 | 22:28 | -6 | 20 |
| 15 |
|
1. FC Saarbrücken | 20 | 5 | 4 | 11 | 21:39 | -18 | 19 |
| 16 |
|
Kickers Offenbach | 20 | 5 | 3 | 12 | 19:40 | -21 | 18 |
| 17 |
|
Dynamo Dresden | 20 | 4 | 5 | 11 | 21:33 | -12 | 17 |
| 18 |
|
LR Ahlen | 20 | 3 | 7 | 10 | 20:33 | -13 | 16 |
