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| 03.11.2006 | 18:00 | SC Freiburg | - | Eintracht Braunschweig | 1:0 (0:0) | |
| 18:00 | Karlsruher SC | - | SC Paderborn 07 | 3:0 (1:0) | ||
| 18:00 | Hansa Rostock | - | FC Carl Zeiss Jena | 1:1 (0:0) | ||
| 18:00 | TSV 1860 München | - | Rot-Weiss Essen | 2:0 (0:0) | ||
| 18:00 | SpVgg Unterhaching | - | Wacker Burghausen | 0:2 (0:0) | ||
| 18:00 | TuS Koblenz | - | 1. FC Köln | 3:1 (0:0) | ||
| 05.11.2006 | 14:00 | MSV Duisburg | - | 1. FC Kaiserslautern | 1:1 (1:1) | |
| 14:00 | SpVgg Greuther Fürth | - | Kickers Offenbach | 2:0 (0:0) | ||
| 14:00 | Erzgebirge Aue | - | FC Augsburg | 1:1 (0:1) |
| # | Team | GS. | W. | G. | V. | Dp. | Ds. | P. | |
|---|---|---|---|---|---|---|---|---|---|
| 1 |
|
Karlsruher SC | 10 | 7 | 3 | 0 | 25:10 | 15 | 24 |
| 2 |
|
Hansa Rostock | 10 | 6 | 4 | 0 | 14:6 | 8 | 22 |
| 3 |
|
MSV Duisburg | 10 | 4 | 5 | 1 | 18:13 | 5 | 17 |
| 4 |
|
1. FC Kaiserslautern | 10 | 5 | 2 | 3 | 15:12 | 3 | 17 |
| 5 |
|
1. FC Köln | 10 | 4 | 3 | 3 | 18:13 | 5 | 15 |
| 6 |
|
TSV 1860 München | 10 | 4 | 3 | 3 | 11:8 | 3 | 15 |
| 7 |
|
SC Paderborn 07 | 10 | 4 | 3 | 3 | 11:11 | 0 | 15 |
| 8 |
|
SpVgg Greuther Fürth | 10 | 4 | 2 | 4 | 19:15 | 4 | 14 |
| 9 |
|
TuS Koblenz | 10 | 4 | 2 | 4 | 15:14 | 1 | 14 |
| 10 |
|
SC Freiburg | 10 | 3 | 5 | 2 | 13:12 | 1 | 14 |
| 11 |
|
FC Augsburg | 10 | 3 | 4 | 3 | 10:9 | 1 | 13 |
| 12 |
|
FC Carl Zeiss Jena | 10 | 2 | 5 | 3 | 14:18 | -4 | 11 |
| 13 |
|
Erzgebirge Aue | 10 | 3 | 2 | 5 | 12:18 | -6 | 11 |
| 14 |
|
Rot-Weiss Essen | 10 | 2 | 3 | 5 | 11:13 | -2 | 9 |
| 15 |
|
Kickers Offenbach | 10 | 2 | 3 | 5 | 10:15 | -5 | 9 |
| 16 |
|
Wacker Burghausen | 10 | 2 | 2 | 6 | 8:21 | -13 | 8 |
| 17 |
|
SpVgg Unterhaching | 10 | 1 | 4 | 5 | 5:10 | -5 | 7 |
| 18 |
|
Eintracht Braunschweig | 10 | 1 | 3 | 6 | 5:16 | -11 | 6 |
