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| 29.09.2006 | 18:00 | SC Paderborn 07 | - | 1. FC Köln | 2:0 (0:0) | |
| 18:00 | SpVgg Unterhaching | - | 1. FC Kaiserslautern | 1:1 (0:0) | ||
| 18:00 | TuS Koblenz | - | Kickers Offenbach | 1:1 (1:0) | ||
| 01.10.2006 | 14:00 | SpVgg Greuther Fürth | - | Wacker Burghausen | 4:1 (1:0) | |
| 14:00 | Karlsruher SC | - | FC Augsburg | 3:2 (2:1) | ||
| 14:00 | Erzgebirge Aue | - | SC Freiburg | 3:1 (2:0) | ||
| 14:00 | TSV 1860 München | - | FC Carl Zeiss Jena | 2:0 (0:0) | ||
| 14:00 | Rot-Weiss Essen | - | Eintracht Braunschweig | 2:0 (1:0) | ||
| 02.10.2006 | 20:15 | Hansa Rostock | - | MSV Duisburg | 1:0 (0:0) |
| # | Team | GS. | W. | G. | V. | Dp. | Ds. | P. | |
|---|---|---|---|---|---|---|---|---|---|
| 1 |
|
Karlsruher SC | 6 | 4 | 2 | 0 | 15:7 | 8 | 14 |
| 2 |
|
Hansa Rostock | 6 | 4 | 2 | 0 | 8:2 | 6 | 14 |
| 3 |
|
1. FC Köln | 6 | 4 | 0 | 2 | 14:7 | 7 | 12 |
| 4 |
|
TSV 1860 München | 6 | 3 | 3 | 0 | 9:2 | 7 | 12 |
| 5 |
|
MSV Duisburg | 6 | 3 | 2 | 1 | 10:7 | 3 | 11 |
| 6 |
|
SC Paderborn 07 | 6 | 3 | 2 | 1 | 6:4 | 2 | 11 |
| 7 |
|
1. FC Kaiserslautern | 6 | 3 | 1 | 2 | 8:8 | 0 | 10 |
| 8 |
|
SpVgg Greuther Fürth | 6 | 2 | 2 | 2 | 12:9 | 3 | 8 |
| 9 |
|
Rot-Weiss Essen | 6 | 2 | 2 | 2 | 8:6 | 2 | 8 |
| 10 |
|
TuS Koblenz | 6 | 2 | 1 | 3 | 9:9 | 0 | 7 |
| 11 |
|
FC Carl Zeiss Jena | 6 | 1 | 4 | 1 | 10:11 | -1 | 7 |
| 12 |
|
Erzgebirge Aue | 6 | 2 | 1 | 3 | 7:10 | -3 | 7 |
| 13 |
|
FC Augsburg | 6 | 1 | 2 | 3 | 4:7 | -3 | 5 |
| 14 |
|
SC Freiburg | 6 | 0 | 4 | 2 | 6:10 | -4 | 4 |
| 15 |
|
Wacker Burghausen | 6 | 1 | 1 | 4 | 5:17 | -12 | 4 |
| 16 |
|
SpVgg Unterhaching | 6 | 0 | 3 | 3 | 3:6 | -3 | 3 |
| 17 |
|
Kickers Offenbach | 6 | 0 | 3 | 3 | 5:10 | -5 | 3 |
| 18 |
|
Eintracht Braunschweig | 6 | 0 | 3 | 3 | 3:10 | -7 | 3 |
