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| 30.01.2009 | 18:00 | FC Augsburg | - | 1. FC Nürnberg | 0:0 (0:0) | |
| 18:00 | VfL Osnabrück | - | FC St. Pauli | 2:2 (1:0) | ||
| 18:00 | Rot-Weiß Oberhausen | - | TuS Koblenz | 0:0 (0:0) | ||
| 01.02.2009 | 14:00 | Hansa Rostock | - | MSV Duisburg | 0:1 (0:0) | |
| 14:00 | TSV 1860 München | - | SC Freiburg | 0:2 (0:1) | ||
| 14:00 | SV Wehen Wiesbaden | - | Alemannia Aachen | 1:0 (1:0) | ||
| 14:00 | FSV Frankfurt | - | Rot Weiss Ahlen | 4:0 (2:0) | ||
| 14:00 | SpVgg Greuther Fürth | - | FC Ingolstadt 04 | 6:1 (5:1) | ||
| 02.02.2009 | 20:15 | 1. FC Kaiserslautern | - | 1. FSV Mainz 05 | 1:1 (0:1) |
| # | Team | GS. | W. | G. | V. | Dp. | Ds. | P. | |
|---|---|---|---|---|---|---|---|---|---|
| 1 |
|
SC Freiburg | 18 | 10 | 3 | 5 | 28:18 | 10 | 33 |
| 2 |
|
SpVgg Greuther Fürth | 18 | 9 | 5 | 4 | 42:26 | 16 | 32 |
| 3 |
|
1. FSV Mainz 05 | 18 | 9 | 5 | 4 | 34:20 | 14 | 32 |
| 4 |
|
1. FC Kaiserslautern | 18 | 9 | 5 | 4 | 34:22 | 12 | 32 |
| 5 |
|
Alemannia Aachen | 18 | 8 | 4 | 6 | 26:20 | 6 | 28 |
| 6 |
|
FC Augsburg | 18 | 8 | 4 | 6 | 25:22 | 3 | 28 |
| 7 |
|
FC St. Pauli | 18 | 8 | 4 | 6 | 30:32 | -2 | 28 |
| 8 |
|
1. FC Nürnberg | 18 | 6 | 8 | 4 | 24:17 | 7 | 26 |
| 9 |
|
MSV Duisburg | 18 | 6 | 7 | 5 | 25:19 | 6 | 25 |
| 10 |
|
Rot Weiss Ahlen | 18 | 7 | 3 | 8 | 24:34 | -10 | 24 |
| 11 |
|
TSV 1860 München | 18 | 6 | 4 | 8 | 20:19 | 1 | 22 |
| 12 |
|
FC Ingolstadt 04 | 18 | 6 | 3 | 9 | 24:34 | -10 | 21 |
| 13 |
|
Rot-Weiß Oberhausen | 18 | 6 | 3 | 9 | 17:31 | -14 | 21 |
| 14 |
|
VfL Osnabrück | 18 | 4 | 8 | 6 | 26:33 | -7 | 20 |
| 15 |
|
Hansa Rostock | 18 | 4 | 5 | 9 | 25:30 | -5 | 17 |
| 16 |
|
SV Wehen Wiesbaden | 18 | 3 | 8 | 7 | 19:31 | -12 | 17 |
| 17 |
|
FSV Frankfurt | 18 | 3 | 7 | 8 | 19:27 | -8 | 16 |
| 18 |
|
TuS Koblenz | 18 | 4 | 6 | 8 | 22:29 | -7 | 15 |
| Promotie | |
| Promotie en degradatie | |
| Promotie en degradatie | |
| Degradatie |
