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| 19.04.2013 | 18:00 | VfL Bochum | - | FC St. Pauli | 3:0 (2:0) | |
| 18:00 | VfR Aalen | - | 1. FC Union Berlin | 3:0 (2:0) | ||
| 18:00 | Jahn Regensburg | - | FC Ingolstadt 04 | 1:2 (1:2) | ||
| 20.04.2013 | 13:00 | 1. FC Kaiserslautern | - | SC Paderborn 07 | 3:0 (1:0) | |
| 13:00 | TSV 1860 München | - | FSV Frankfurt | 1:2 (0:2) | ||
| 21.04.2013 | 13:30 | Dynamo Dresden | - | Energie Cottbus | 1:0 (0:0) | |
| 13:30 | Eintracht Braunschweig | - | Erzgebirge Aue | 1:1 (1:0) | ||
| 13:30 | Hertha BSC | - | SV Sandhausen | 1:0 (0:0) | ||
| 22.04.2013 | 20:15 | MSV Duisburg | - | 1. FC Köln | 1:1 (0:1) |
| # | Team | GS. | W. | G. | V. | Dp. | Ds. | P. | |
|---|---|---|---|---|---|---|---|---|---|
| 1 |
|
Hertha BSC | 30 | 19 | 9 | 2 | 56:22 | 34 | 66 |
| 2 |
|
Eintracht Braunschweig | 30 | 18 | 8 | 4 | 48:27 | 21 | 62 |
| 3 |
|
1. FC Kaiserslautern | 30 | 13 | 13 | 4 | 45:25 | 20 | 52 |
| 4 |
|
1. FC Köln | 30 | 13 | 11 | 6 | 37:28 | 9 | 50 |
| 5 |
|
FSV Frankfurt | 30 | 14 | 5 | 11 | 47:37 | 10 | 47 |
| 6 |
|
TSV 1860 München | 30 | 10 | 12 | 8 | 32:28 | 4 | 42 |
| 7 |
|
1. FC Union Berlin | 30 | 10 | 10 | 10 | 45:44 | 1 | 40 |
| 8 |
|
Energie Cottbus | 30 | 10 | 10 | 10 | 33:33 | 0 | 40 |
| 9 |
|
VfR Aalen | 30 | 10 | 9 | 11 | 33:33 | 0 | 39 |
| 10 |
|
FC Ingolstadt 04 | 30 | 9 | 12 | 9 | 34:36 | -2 | 39 |
| 11 |
|
SC Paderborn 07 | 30 | 10 | 8 | 12 | 38:38 | 0 | 38 |
| 12 |
|
MSV Duisburg | 30 | 10 | 8 | 12 | 33:45 | -12 | 38 |
| 13 |
|
FC St. Pauli | 30 | 9 | 9 | 12 | 35:42 | -7 | 36 |
| 14 |
|
Erzgebirge Aue | 30 | 8 | 9 | 13 | 36:42 | -6 | 33 |
| 15 |
|
VfL Bochum | 30 | 8 | 8 | 14 | 35:47 | -12 | 32 |
| 16 |
|
Dynamo Dresden | 30 | 7 | 10 | 13 | 29:41 | -12 | 31 |
| 17 |
|
SV Sandhausen | 30 | 5 | 8 | 17 | 35:60 | -25 | 23 |
| 18 |
|
Jahn Regensburg | 30 | 4 | 7 | 19 | 33:56 | -23 | 19 |
| Promotie | |
| Promotie en degradatie | |
| Degradatie | |
| Promotie en degradatie | |
| Degradatie |
