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| 20.04.2000 | 19:00 | 1. FC Nürnberg | - | 1. FC Köln | 1:1 (1:1) | |
| 19:00 | Hannover 96 | - | Alemannia Aachen | 3:1 (1:1) | ||
| 19:00 | 1. FSV Mainz 05 | - | Rot-Weiß Oberhausen | 1:1 (1:0) | ||
| 22.04.2000 | 15:30 | Bor. Mönchengladbach | - | TeBe Berlin | 4:2 (1:1) | |
| 15:30 | Waldhof Mannheim | - | VfL Bochum | 4:2 (1:0) | ||
| 23.04.2000 | 14:45 | Karlsruher SC | - | Energie Cottbus | 1:0 (0:0) | |
| 15:00 | Kickers Offenbach | - | Stuttgarter Kickers | 0:4 (0:1) | ||
| 15:00 | Fortuna Köln | - | SpVgg Greuther Fürth | 0:1 (0:0) | ||
| 24.04.2000 | 20:15 | Chemnitzer FC | - | FC St. Pauli | 1:3 (1:1) |
| # | Team | GS. | W. | G. | V. | Dp. | Ds. | P. | |
|---|---|---|---|---|---|---|---|---|---|
| 1 |
|
1. FC Köln | 28 | 15 | 8 | 5 | 52:27 | 25 | 53 |
| 2 |
|
VfL Bochum | 28 | 14 | 6 | 8 | 49:40 | 9 | 48 |
| 3 |
|
Energie Cottbus | 28 | 14 | 3 | 11 | 50:34 | 16 | 45 |
| 4 |
|
1. FC Nürnberg | 28 | 12 | 9 | 7 | 44:40 | 4 | 45 |
| 5 |
|
Bor. Mönchengladbach | 28 | 11 | 11 | 6 | 47:35 | 12 | 44 |
| 6 |
|
Hannover 96 | 28 | 11 | 7 | 10 | 45:42 | 3 | 40 |
| 7 |
|
Waldhof Mannheim | 28 | 9 | 12 | 7 | 42:41 | 1 | 39 |
| 8 |
|
Alemannia Aachen | 28 | 10 | 9 | 9 | 37:44 | -7 | 39 |
| 9 |
|
TeBe Berlin | 28 | 9 | 10 | 9 | 35:39 | -4 | 37 |
| 10 |
|
Rot-Weiß Oberhausen | 28 | 8 | 11 | 9 | 32:31 | 1 | 35 |
| 11 |
|
SpVgg Greuther Fürth | 28 | 7 | 14 | 7 | 30:33 | -3 | 35 |
| 12 |
|
Chemnitzer FC | 28 | 9 | 8 | 11 | 36:40 | -4 | 35 |
| 13 |
|
FC St. Pauli | 28 | 7 | 13 | 8 | 29:32 | -3 | 34 |
| 14 |
|
1. FSV Mainz 05 | 28 | 7 | 12 | 9 | 33:33 | 0 | 33 |
| 15 |
|
Stuttgarter Kickers | 28 | 8 | 7 | 13 | 43:49 | -6 | 31 |
| 16 |
|
Kickers Offenbach | 28 | 6 | 11 | 11 | 27:42 | -15 | 29 |
| 17 |
|
Fortuna Köln | 28 | 5 | 11 | 12 | 25:40 | -15 | 26 |
| 18 |
|
Karlsruher SC | 28 | 4 | 10 | 14 | 31:45 | -14 | 22 |
