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| 01.05.2009 | 18:00 | FC Augsburg | - | TSV 1860 München | 3:0 (1:0) | |
| 18:00 | SV Wehen Wiesbaden | - | VfL Osnabrück | 0:1 (0:0) | ||
| 18:00 | Hansa Rostock | - | 1. FC Kaiserslautern | 5:1 (2:0) | ||
| 03.05.2009 | 14:00 | Rot Weiss Ahlen | - | FC St. Pauli | 1:0 (0:0) | |
| 14:00 | 1. FSV Mainz 05 | - | TuS Koblenz | 2:0 (1:0) | ||
| 14:00 | SC Freiburg | - | FSV Frankfurt | 4:1 (2:0) | ||
| 14:00 | Alemannia Aachen | - | Rot-Weiß Oberhausen | 2:2 (1:1) | ||
| 14:00 | 1. FC Nürnberg | - | FC Ingolstadt 04 | 1:0 (1:0) | ||
| 04.05.2009 | 20:15 | MSV Duisburg | - | SpVgg Greuther Fürth | 2:0 (0:0) |
| # | Team | GS. | W. | G. | V. | Dp. | Ds. | P. | |
|---|---|---|---|---|---|---|---|---|---|
| 1 |
|
SC Freiburg | 30 | 19 | 4 | 7 | 51:30 | 21 | 61 |
| 2 |
|
1. FSV Mainz 05 | 30 | 15 | 9 | 6 | 54:34 | 20 | 54 |
| 3 |
|
1. FC Nürnberg | 30 | 14 | 10 | 6 | 46:27 | 19 | 52 |
| 4 |
|
SpVgg Greuther Fürth | 30 | 15 | 6 | 9 | 55:41 | 14 | 51 |
| 5 |
|
Alemannia Aachen | 30 | 14 | 7 | 9 | 51:35 | 16 | 49 |
| 6 |
|
1. FC Kaiserslautern | 30 | 14 | 7 | 9 | 46:38 | 8 | 49 |
| 7 |
|
MSV Duisburg | 30 | 12 | 11 | 7 | 46:31 | 15 | 47 |
| 8 |
|
FC St. Pauli | 30 | 11 | 6 | 13 | 46:57 | -11 | 39 |
| 9 |
|
FC Augsburg | 30 | 10 | 8 | 12 | 39:37 | 2 | 38 |
| 10 |
|
Rot-Weiß Oberhausen | 30 | 10 | 8 | 12 | 33:48 | -15 | 38 |
| 11 |
|
TSV 1860 München | 30 | 9 | 9 | 12 | 39:40 | -1 | 36 |
| 12 |
|
FSV Frankfurt | 30 | 9 | 9 | 12 | 32:42 | -10 | 36 |
| 13 |
|
Rot Weiss Ahlen | 30 | 10 | 6 | 14 | 31:50 | -19 | 36 |
| 14 |
|
Hansa Rostock | 30 | 8 | 10 | 12 | 45:46 | -1 | 34 |
| 15 |
|
TuS Koblenz | 30 | 10 | 7 | 13 | 42:46 | -4 | 34 |
| 16 |
|
VfL Osnabrück | 30 | 7 | 11 | 12 | 36:51 | -15 | 32 |
| 17 |
|
FC Ingolstadt 04 | 30 | 6 | 9 | 15 | 33:50 | -17 | 27 |
| 18 |
|
SV Wehen Wiesbaden | 30 | 4 | 9 | 17 | 25:47 | -22 | 21 |
| Promotie | |
| Promotie en degradatie | |
| Promotie en degradatie | |
| Degradatie |
