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| 08.05.2009 | 18:00 | TSV 1860 München | - | Hansa Rostock | 3:3 (1:2) | |
| 18:00 | FSV Frankfurt | - | MSV Duisburg | 0:0 (0:0) | ||
| 18:00 | VfL Osnabrück | - | Alemannia Aachen | 2:1 (1:0) | ||
| 18:00 | Rot-Weiß Oberhausen | - | SV Wehen Wiesbaden | 0:1 (0:1) | ||
| 18:00 | 1. FC Kaiserslautern | - | FC Augsburg | 1:0 (1:0) | ||
| 10.05.2009 | 14:00 | SpVgg Greuther Fürth | - | 1. FC Nürnberg | 1:1 (0:0) | |
| 14:00 | FC St. Pauli | - | 1. FSV Mainz 05 | 2:0 (1:0) | ||
| 14:00 | TuS Koblenz | - | SC Freiburg | 2:5 (2:2) | ||
| 14:00 | FC Ingolstadt 04 | - | Rot Weiss Ahlen | 0:2 (0:0) |
| # | Team | GS. | W. | G. | V. | Dp. | Ds. | P. | |
|---|---|---|---|---|---|---|---|---|---|
| 1 |
|
SC Freiburg | 31 | 20 | 4 | 7 | 56:32 | 24 | 64 |
| 2 |
|
1. FSV Mainz 05 | 31 | 15 | 9 | 7 | 54:36 | 18 | 54 |
| 3 |
|
1. FC Nürnberg | 31 | 14 | 11 | 6 | 47:28 | 19 | 53 |
| 4 |
|
SpVgg Greuther Fürth | 31 | 15 | 7 | 9 | 56:42 | 14 | 52 |
| 5 |
|
1. FC Kaiserslautern | 31 | 15 | 7 | 9 | 47:38 | 9 | 52 |
| 6 |
|
Alemannia Aachen | 31 | 14 | 7 | 10 | 52:37 | 15 | 49 |
| 7 |
|
MSV Duisburg | 31 | 12 | 12 | 7 | 46:31 | 15 | 48 |
| 8 |
|
FC St. Pauli | 31 | 12 | 6 | 13 | 48:57 | -9 | 42 |
| 9 |
|
Rot Weiss Ahlen | 31 | 11 | 6 | 14 | 33:50 | -17 | 39 |
| 10 |
|
FC Augsburg | 31 | 10 | 8 | 13 | 39:38 | 1 | 38 |
| 11 |
|
Rot-Weiß Oberhausen | 31 | 10 | 8 | 13 | 33:49 | -16 | 38 |
| 12 |
|
TSV 1860 München | 31 | 9 | 10 | 12 | 42:43 | -1 | 37 |
| 13 |
|
FSV Frankfurt | 31 | 9 | 10 | 12 | 32:42 | -10 | 37 |
| 14 |
|
Hansa Rostock | 31 | 8 | 11 | 12 | 48:49 | -1 | 35 |
| 15 |
|
VfL Osnabrück | 31 | 8 | 11 | 12 | 38:52 | -14 | 35 |
| 16 |
|
TuS Koblenz | 31 | 10 | 7 | 14 | 44:51 | -7 | 34 |
| 17 |
|
FC Ingolstadt 04 | 31 | 6 | 9 | 16 | 33:52 | -19 | 27 |
| 18 |
|
SV Wehen Wiesbaden | 31 | 5 | 9 | 17 | 26:47 | -21 | 24 |
| Promotie | |
| Promotie en degradatie | |
| Promotie en degradatie | |
| Degradatie |
