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| 12.05.2009 | 17:30 | SV Wehen Wiesbaden | - | TSV 1860 München | 0:0 (0:0) | |
| 17:30 | Alemannia Aachen | - | 1. FC Kaiserslautern | 1:0 (0:0) | ||
| 17:30 | Hansa Rostock | - | FC Augsburg | 3:3 (1:1) | ||
| 17:30 | MSV Duisburg | - | Rot-Weiß Oberhausen | 1:1 (0:1) | ||
| 13.05.2009 | 17:30 | SC Freiburg | - | SpVgg Greuther Fürth | 0:0 (0:0) | |
| 17:30 | Rot Weiss Ahlen | - | TuS Koblenz | 1:1 (0:0) | ||
| 17:30 | 1. FC Nürnberg | - | VfL Osnabrück | 2:0 (1:0) | ||
| 17:30 | 1. FSV Mainz 05 | - | FSV Frankfurt | 2:1 (1:0) | ||
| 14.05.2009 | 20:15 | FC Ingolstadt 04 | - | FC St. Pauli | 0:1 (0:0) |
| # | Team | GS. | W. | G. | V. | Dp. | Ds. | P. | |
|---|---|---|---|---|---|---|---|---|---|
| 1 |
|
SC Freiburg | 32 | 20 | 5 | 7 | 56:32 | 24 | 65 |
| 2 |
|
1. FSV Mainz 05 | 32 | 16 | 9 | 7 | 56:37 | 19 | 57 |
| 3 |
|
1. FC Nürnberg | 32 | 15 | 11 | 6 | 49:28 | 21 | 56 |
| 4 |
|
SpVgg Greuther Fürth | 32 | 15 | 8 | 9 | 56:42 | 14 | 53 |
| 5 |
|
Alemannia Aachen | 32 | 15 | 7 | 10 | 53:37 | 16 | 52 |
| 6 |
|
1. FC Kaiserslautern | 32 | 15 | 7 | 10 | 47:39 | 8 | 52 |
| 7 |
|
MSV Duisburg | 32 | 12 | 13 | 7 | 47:32 | 15 | 49 |
| 8 |
|
FC St. Pauli | 32 | 13 | 6 | 13 | 49:57 | -8 | 45 |
| 9 |
|
Rot Weiss Ahlen | 32 | 11 | 7 | 14 | 34:51 | -17 | 40 |
| 10 |
|
FC Augsburg | 32 | 10 | 9 | 13 | 42:41 | 1 | 39 |
| 11 |
|
Rot-Weiß Oberhausen | 32 | 10 | 9 | 13 | 34:50 | -16 | 39 |
| 12 |
|
TSV 1860 München | 32 | 9 | 11 | 12 | 42:43 | -1 | 38 |
| 13 |
|
FSV Frankfurt | 32 | 9 | 10 | 13 | 33:44 | -11 | 37 |
| 14 |
|
Hansa Rostock | 32 | 8 | 12 | 12 | 51:52 | -1 | 36 |
| 15 |
|
TuS Koblenz | 32 | 10 | 8 | 14 | 45:52 | -7 | 35 |
| 16 |
|
VfL Osnabrück | 32 | 8 | 11 | 13 | 38:54 | -16 | 35 |
| 17 |
|
FC Ingolstadt 04 | 32 | 6 | 9 | 17 | 33:53 | -20 | 27 |
| 18 |
|
SV Wehen Wiesbaden | 32 | 5 | 10 | 17 | 26:47 | -21 | 25 |
| Promotie | |
| Promotie en degradatie | |
| Promotie en degradatie | |
| Degradatie |
