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| 25.09.2012 | 17:30 | 1. FC Köln | - | FSV Frankfurt | 2:1 (0:0) | |
| 17:30 | FC St. Pauli | - | VfR Aalen | 0:1 (0:1) | ||
| 17:30 | Energie Cottbus | - | SC Paderborn 07 | 2:1 (0:0) | ||
| 17:30 | SV Sandhausen | - | Jahn Regensburg | 1:2 (1:1) | ||
| 26.09.2012 | 17:30 | Hertha BSC | - | Dynamo Dresden | 1:0 (1:0) | |
| 17:30 | Eintracht Braunschweig | - | MSV Duisburg | 3:0 (0:0) | ||
| 17:30 | FC Ingolstadt 04 | - | TSV 1860 München | 0:2 (0:1) | ||
| 17:30 | Erzgebirge Aue | - | 1. FC Union Berlin | 1:1 (0:1) | ||
| 27.09.2012 | 20:15 | VfL Bochum | - | 1. FC Kaiserslautern | 1:2 (0:1) |
| # | Team | GS. | W. | G. | V. | Dp. | Ds. | P. | |
|---|---|---|---|---|---|---|---|---|---|
| 1 |
|
Eintracht Braunschweig | 7 | 6 | 1 | 0 | 12:2 | 10 | 19 |
| 2 |
|
Energie Cottbus | 7 | 5 | 2 | 0 | 13:5 | 8 | 17 |
| 3 |
|
1. FC Kaiserslautern | 7 | 4 | 3 | 0 | 13:8 | 5 | 15 |
| 4 |
|
FSV Frankfurt | 7 | 4 | 2 | 1 | 12:7 | 5 | 14 |
| 5 |
|
Hertha BSC | 7 | 4 | 2 | 1 | 11:8 | 3 | 14 |
| 6 |
|
TSV 1860 München | 7 | 3 | 4 | 0 | 9:3 | 6 | 13 |
| 7 |
|
VfR Aalen | 7 | 4 | 0 | 3 | 9:8 | 1 | 12 |
| 8 |
|
FC Ingolstadt 04 | 7 | 3 | 2 | 2 | 9:9 | 0 | 11 |
| 9 |
|
SC Paderborn 07 | 7 | 3 | 1 | 3 | 13:9 | 4 | 10 |
| 10 |
|
VfL Bochum | 7 | 2 | 2 | 3 | 4:8 | -4 | 8 |
| 11 |
|
Jahn Regensburg | 7 | 2 | 0 | 5 | 5:7 | -2 | 6 |
| 12 |
|
SV Sandhausen | 7 | 1 | 3 | 3 | 7:10 | -3 | 6 |
| 13 |
|
FC St. Pauli | 7 | 1 | 3 | 3 | 4:7 | -3 | 6 |
| 14 |
|
Dynamo Dresden | 7 | 1 | 2 | 4 | 8:11 | -3 | 5 |
| 15 |
|
1. FC Union Berlin | 7 | 1 | 2 | 4 | 8:12 | -4 | 5 |
| 16 |
|
1. FC Köln | 7 | 1 | 2 | 4 | 4:8 | -4 | 5 |
| 17 |
|
Erzgebirge Aue | 7 | 1 | 2 | 4 | 3:8 | -5 | 5 |
| 18 |
|
MSV Duisburg | 7 | 0 | 1 | 6 | 3:17 | -14 | 1 |
| Promotie | |
| Promotie en degradatie | |
| Degradatie | |
| Promotie en degradatie | |
| Degradatie |
