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| U | FC Flora | - | Lincoln Red Imps | 2:1 (1:0) | ||
| R | Lincoln Red Imps | - | FC Flora | 2:0 (1:0) | ||
| U: 28.06.2016 18:00 | R: 06.07.2016 19:00 | Winnaars: Lincoln Red Imps | ||||
| U | Valletta FC | - | B36 Tórshavn | 1:0 (0:0) | ||
| R | B36 Tórshavn | - | Valletta FC | 2:1 (1:1) | ||
| U: 28.06.2016 19:00 | R: 05.07.2016 19:00 | Winnaars: Valletta FC | ||||
| U | The New Saints | - | SP Tre Penne | 2:1 (2:1) | ||
| R | SP Tre Penne | - | The New Saints | 0:3 (0:1) | ||
| U: 28.06.2016 20:00 | R: 05.07.2016 20:30 | Winnaars: The New Saints | ||||
| U | FC Santa Coloma | - | FC Alashkert | 0:0 (0:0) | ||
| R | FC Alashkert | - | FC Santa Coloma | 3:0 (1:0) | ||
| U: 28.06.2016 20:00 | R: 05.07.2016 17:00 | Winnaars: FC Alashkert | ||||
