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| U | Anzhi Makhachkala | - | Vitesse | 2:0 (0:0) | ||
| R | Vitesse | - | Anzhi Makhachkala | 0:2 (0:0) | ||
| U: 02.08.2012 17:00 | R: 09.08.2012 20:00 | Winnaars: Anzhi Makhachkala | ||||
| U | Kuopion PS | - | Bursaspor | 1:0 (0:0) | ||
| R | Bursaspor | - | Kuopion PS | 6:0 (3:0) | ||
| U: 02.08.2012 17:30 | R: 09.08.2012 20:30 | Winnaars: Bursaspor | ||||
| U | Dila Gori | - | Anorthosis Famagusta | 0:1 (0:0) | ||
| R | Anorthosis Famagusta | - | Dila Gori | 0:3 (0:0) Toeg. | ||
| U: 02.08.2012 18:00 | R: 09.08.2012 | Winnaars: Dila Gori | ||||
| U | Arsenal Kiev | - | ND Mura 05 | 0:3 (1:0) Toeg. | ||
| R | ND Mura 05 | - | Arsenal Kiev | 0:2 (0:1) | ||
| U: 02.08.2012 18:00 | R: 09.08.2012 20:00 | Winnaars: ND Mura 05 | ||||
| U | Ruch Chorzów | - | Viktoria Plzeň | 0:2 (0:0) | ||
| R | Viktoria Plzeň | - | Ruch Chorzów | 5:0 (3:0) | ||
| U: 02.08.2012 19:00 | R: 09.08.2012 20:00 | Winnaars: Viktoria Plzeň | ||||
| U | APOEL Nicosia | - | Aalesunds FK | 2:1 (1:1) | ||
| R | Aalesunds FK | - | APOEL Nicosia | 0:1 (0:1) | ||
| U: 02.08.2012 19:00 | R: 09.08.2012 19:00 | Winnaars: APOEL Nicosia | ||||
| U | Tromsø IL | - | Metalurh Donetsk | 1:1 (1:0) | ||
| R | Metalurh Donetsk | - | Tromsø IL | 0:1 (0:1) | ||
| U: 02.08.2012 19:00 | R: 09.08.2012 19:00 | Winnaars: Tromsø IL | ||||
| U | Bnei Yehuda Tel Aviv | - | PAOK Saloniki | 0:2 (0:0) | ||
| R | PAOK Saloniki | - | Bnei Yehuda Tel Aviv | 4:1 (0:1) | ||
| U: 02.08.2012 19:00 | R: 09.08.2012 20:00 | Winnaars: PAOK Saloniki | ||||
| U | AIK Solna | - | Lech Poznań | 3:0 (0:0) | ||
| R | Lech Poznań | - | AIK Solna | 1:0 (0:0) | ||
| U: 02.08.2012 19:00 | R: 09.08.2012 20:00 | Winnaars: AIK Solna | ||||
| U | Kalmar FF | - | BSC Young Boys | 1:0 (1:0) | ||
| R | BSC Young Boys | - | Kalmar FF | 3:0 (1:0) | ||
| U: 02.08.2012 19:00 | R: 09.08.2012 19:30 | Winnaars: BSC Young Boys | ||||
| U | SV Ried | - | Legia Warschau | 2:1 (0:0) | ||
| R | Legia Warschau | - | SV Ried | 3:1 (1:0) | ||
| U: 02.08.2012 19:00 | R: 09.08.2012 19:00 | Winnaars: Legia Warschau | ||||
| U | sc Heerenveen | - | Rapid Bucureşti | 4:0 (1:0) | ||
| R | Rapid Bucureşti | - | sc Heerenveen | 1:0 (1:0) | ||
| U: 02.08.2012 19:30 | R: 09.08.2012 20:30 | Winnaars: sc Heerenveen | ||||
| U | FC Twente | - | FK Mladá Boleslav | 2:0 (0:0) | ||
| R | FK Mladá Boleslav | - | FC Twente | 0:2 (0:2) | ||
| U: 02.08.2012 19:45 | R: 09.08.2012 19:00 | Winnaars: FC Twente | ||||
| U | FCSB | - | Spartak Trnava | 0:1 (0:1) | ||
| R | Spartak Trnava | - | FCSB | 0:3 (0:1) | ||
| U: 02.08.2012 19:45 | R: 09.08.2012 19:30 | Winnaars: FCSB | ||||
| U | Servette FC | - | Rosenborg BK | 1:1 (0:0) | ||
| R | Rosenborg BK | - | Servette FC | 0:0 (0:0) | ||
| U: 02.08.2012 19:45 | R: 09.08.2012 19:00 | Winnaars: Rosenborg BK | ||||
| U | KRC Genk | - | FK Aktobe | 2:1 (2:1) | ||
| R | FK Aktobe | - | KRC Genk | 1:2 (1:1) | ||
| U: 02.08.2012 20:00 | R: 09.08.2012 18:00 | Winnaars: KRC Genk | ||||
| U | FK Gomel | - | Liverpool FC | 0:1 (0:0) | ||
| R | Liverpool FC | - | FK Gomel | 3:0 (2:0) | ||
| U: 02.08.2012 20:00 | R: 09.08.2012 21:05 | Winnaars: Liverpool FC | ||||
| U | Asteras Tripolis | - | CS Marítimo | 1:1 (0:0) | ||
| R | CS Marítimo | - | Asteras Tripolis | 0:0 (0:0) | ||
| U: 02.08.2012 20:00 | R: 09.08.2012 21:00 | Winnaars: CS Marítimo | ||||
| U | AC Horsens | - | IF Elfsborg | 1:1 (0:0) | ||
| R | IF Elfsborg | - | AC Horsens | 2:3 (2:3) | ||
| U: 02.08.2012 20:15 | R: 09.08.2012 18:00 | Winnaars: AC Horsens | ||||
| U | Videoton FC | - | KAA Gent | 1:0 (0:0) | ||
| R | KAA Gent | - | Videoton FC | 0:3 (0:1) | ||
| U: 02.08.2012 20:30 | R: 09.08.2012 19:30 | Winnaars: Videoton FC | ||||
| U | Rode Ster Belgrado | - | Omonia Nikosia | 0:0 (0:0) | ||
| R | Omonia Nikosia | - | Rode Ster Belgrado | 5:6 (0:0, 0:0, 0:0) d.p. | ||
| U: 02.08.2012 20:30 | R: 09.08.2012 18:00 | Winnaars: Rode Ster Belgrado | ||||
| U | Hajduk Split | - | Inter | 0:3 (0:2) | ||
| R | Inter | - | Hajduk Split | 0:2 (0:1) | ||
| U: 02.08.2012 20:45 | R: 09.08.2012 20:45 | Winnaars: Inter | ||||
| U | Eskişehirspor | - | Olympique Marseille | 1:1 (0:0) | ||
| R | Olympique Marseille | - | Eskişehirspor | 3:0 (2:0) | ||
| U: 02.08.2012 20:45 | R: 09.08.2012 20:45 | Winnaars: Olympique Marseille | ||||
| U | Dundee United | - | Dinamo Moskou | 2:2 (1:0) | ||
| R | Dinamo Moskou | - | Dundee United | 5:0 (3:0) | ||
| U: 02.08.2012 20:45 | R: 09.08.2012 18:00 | Winnaars: Dinamo Moskou | ||||
| U | St Patrick's Athletic | - | Hannover 96 | 0:3 (0:1) | ||
| R | Hannover 96 | - | St Patrick's Athletic | 2:0 (1:0) | ||
| U: 02.08.2012 20:45 | R: 09.08.2012 20:30 | Winnaars: Hannover 96 | ||||
| U | Athletic Bilbao | - | Slaven Belupo | 3:1 (2:1) | ||
| R | Slaven Belupo | - | Athletic Bilbao | 2:1 (1:0) | ||
| U: 02.08.2012 21:00 | R: 09.08.2012 18:45 | Winnaars: Athletic Bilbao | ||||
| U | Vojvodina | - | Rapid Wien | 2:1 (0:0) | ||
| R | Rapid Wien | - | Vojvodina | 2:0 (0:0) | ||
| U: 02.08.2012 21:00 | R: 09.08.2012 21:05 | Winnaars: Rapid Wien | ||||
| U | FK Sarajevo | - | FK Zeta | 2:1 (2:1) | ||
| R | FK Zeta | - | FK Sarajevo | 1:0 (1:0) | ||
| U: 02.08.2012 21:00 | R: 09.08.2012 20:00 | Winnaars: FK Zeta | ||||
| U | FC Admira Wacker | - | Sparta Praag | 0:2 (0:1) | ||
| R | Sparta Praag | - | FC Admira Wacker | 2:2 (2:1) | ||
| U: 02.08.2012 21:05 | R: 09.08.2012 20:00 | Winnaars: Sparta Praag | ||||
